PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g032910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 285aa    MW: 31244.8 Da    PI: 4.2891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g032910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-0977122453
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                      GVr ++ +gr++AeI+ p     + ++ +lg+fgt+e+A ka++  + ++
  Csa14g032910.1  77 VGVRPRP-SGRFAAEIMNPI----TrTKQWLGTFGTPEDAEKAYVDKKVEY 122
                     69**999.7*********83....35888***************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-751271IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.49E-1373115No hitNo description
SMARTSM003802.0E-474124IPR001471AP2/ERF domain
PROSITE profilePS5103212.69475133IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1077122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-1278116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKSSVKPKRL LRKVSVIVSD PDATDDSSGD EWLGIPKPRK VKRIVHEITF LSEDSEISQD  60
GVKTSRKIPP RQAKYPVGVR PRPSGRFAAE IMNPITRTKQ WLGTFGTPED AEKAYVDKKV  120
EYDAFASSRS SVSSSVVSVT SQCLRSPASA SVSCVSVDDL SEEKTSLNKD VAASGDSTKE  180
VFANFDFSDL QIPDLSFLSV EEDIMVSGAY DAGLDFERFL TADSDHLLDD YSLLDKDINI  240
GGFENSVPSE LPDCDFTDME LEFGDLKFAY ADQLAPPLNI AFEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g032910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460372.10.0PREDICTED: ethylene-responsive transcription factor ERF116-like
RefseqXP_010460373.10.0PREDICTED: ethylene-responsive transcription factor ERF116-like
SwissprotQ8GW171e-116EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLR0II301e-146R0II30_9BRAS; Uncharacterized protein
STRINGXP_010460371.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.27e-94ERF family protein