PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g034110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 166aa MW: 18675.3 Da PI: 8.2164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g034110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	58	106	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq Csa14g034110.1 58 ESHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLDVIIDYVRSLQ 106 68*************************8....355888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	52	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.27E-12	53	110	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-16	54	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.669	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	58	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-9	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MMLELAGDSG RKGNKGVSGS KRRRRKRLEE VETMNEDETH QKPKDVVHVR AKRGQATESH 60 SLAERVRREK INERLKCLQD LVPGCYKTMG MAVMLDVIID YVRSLQNQIE FLSTKLSAAS 120 AYYDLNSLDV APTDIFQEGN MSSAEEMERI LIGTQPPNFS SILPF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KRRRRK
2	20	26	KRRRRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g034110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175757	1e-147	AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBank	AY088885	1e-147	AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBank	DQ446289	1e-147	DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
GenBank	DQ652859	1e-147	DQ652859.1 Arabidopsis thaliana clone 0000017109_0000011994 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019091052.1	1e-120	PREDICTED: transcription factor bHLH75-like
Swissprot	A4D998	2e-82	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A078GGE3	4e-87	A0A078GGE3_BRANA; BnaCnng04710D protein
TrEMBL	A0A0D3BI54	5e-87	A0A0D3BI54_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6R1I8	5e-87	A0A3N6R1I8_BRACR; Uncharacterized protein
STRING	XP_010462908.1	1e-115	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14081	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-82	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]