PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g034140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 134aa    MW: 15450.6 Da    PI: 8.4914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g034140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.4e-06791161355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+ i++++eeL+ + P++   p++ ++  +iL  ++eY+++Lq
  Csa14g034140.1  79 RELIRTKLEELKAVTPNC---PQTDMN--AILDCTIEYVRHLQ 116
                     66799************9...777777..9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.64266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.007672121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-578116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-778118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MNNDEEFLRL WLERVNSLAD PEAHSNVRRI NNEGGEENAR QKRPAESKSD GKKSRVKRQC  60
TTKSSDKSPD ELLAKEMKRE LIRTKLEELK AVTPNCPQTD MNAILDCTIE YVRHLQLAIL  120
FIALHEYVRN NKM*
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g034140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460396.16e-95PREDICTED: transcription factor MEE8-like isoform X1
SwissprotQ9FRI03e-40MEE8_ARATH; Transcription factor MEE8
TrEMBLR0ILF66e-50R0ILF6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010460396.12e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.11e-42bHLH family protein