PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g034270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 473aa    MW: 53982.7 Da    PI: 8.4416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g034270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-0685107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C++ F r  nL+ H r+H
  Csa14g034270.1  85 YVCEICNQGFQRDQNLQMHRRRH 107
                     9*********************9 PP
2zf-C2H214.40.00011164186123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k +  +s++k H++t+
  Csa14g034270.1 164 WVCERCSKGYAVQSDYKAHLKTC 186
                     58*******************98 PP
3zf-C2H210.80.0015194212523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  Csa14g034270.1 194 DCGRVFSRVESFIEHQDTC 212
                     9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-582108No hitNo description
Gene3DG3DSA:3.30.160.601.9E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9785107IPR007087Zinc finger, C2H2
SMARTSM003550.005285107IPR015880Zinc finger, C2H2-like
PfamPF128740.02385103No hitNo description
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355100128158IPR015880Zinc finger, C2H2-like
SMARTSM0035594164191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MTTGTFLLHL PTIFFLASME LPRENGDLQA HQVFNNSANE YLVSDPDAEV VSLSPRTLLE  60
SDRYVYPDAE VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREKKD  120
EEVRKRVYVC PEPTCLHNNP CHALGDLVGI KKHFRRKHSV HKQWVCERCS KGYAVQSDYK  180
AHLKTCGSRG HSCDCGRVFS RVESFIEHQD TCTIRHPPPT NHRPLQQHTD SIAAPSRTTS  240
TTSFGPLLHG LPLLRPPPPS YQHSQALAYP FNALAAAPFE SLELQLSIGM ARTSAQAKST  300
EKGETSLTKQ RPNEEARMAE KMRQEAKRQI EMAETDFEKA KRIRKEAKAE LEKAQIVREE  360
AIKRINATMM EITCHSCKHL MAEKMRQEAK RQIEMAETDF EKAKRIRKEA KAELEKAQIV  420
REEAIKRINA TMMEITCHSC KHLFQLPIMA DESTSSLVMS YVSSATTEGE CE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17162212555Zinc finger protein JACKDAW
5b3h_F5e-17162212555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g034270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305059.10.0protein indeterminate-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLR0GPX00.0R0GPX0_9BRAS; Uncharacterized protein
STRINGCagra.2231s0014.1.p0.0(Capsella grandiflora)
STRINGXP_006305059.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.11e-159indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]