PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g038430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 434aa MW: 46860.6 Da PI: 5.113

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g038430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.3e-31	216	274	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Csa14g038430.1 216 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 274 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038153	3.1E-253	1	433	No hit	No description
Gene3D	G3DSA:2.20.25.80	7.6E-31	209	276	IPR003657	WRKY domain
PROSITE profile	PS50811	32.879	210	276	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	213	276	IPR003657	WRKY domain
SMART	SM00774	6.3E-38	215	275	IPR003657	WRKY domain
Pfam	PF03106	7.6E-26	217	274	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MCSVSELLDM DSFQGDLTDV VRGIGGHVLS PETPPQNIWP LPLTHPPPSP SSDLHINPFG 60 DPFVSMNDPL LQELNAVTNS SYFSTVGDNN NTNNNGFLVP KVFEEDHIKS QCSIFPRIRI 120 SHSNIIHDSS PCNSPAMSAH AVAAAAAASP RGIINVDTNS PRNCLLVDGN TFSSQIQISS 180 PRNLGLKRRK SQAKKVVCIP APAAMNSRSS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR 240 CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPIQRN ALAGSTRSSS SSTNPNSSKS 300 PTANANAVAT SIGSQNTTYL PSSATPPPPP PPVSVSSVKD ERGDDMELEN VEDDDDIAPY 360 RPELHDHQNQ PDDFFADLEE LEGDSLSMLL SQGCAGDGKD KKMASDGISD FFGWSGDNSN 420 NNNNNDDQES RSL*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MCSVSELLDM DSFQGDLTDV VRGIGGHVLS PETPPQNIWP LPLTHPPPSP SSDLHINPFG  60
DPFVSMNDPL LQELNAVTNS SYFSTVGDNN NTNNNGFLVP KVFEEDHIKS QCSIFPRIRI  120
SHSNIIHDSS PCNSPAMSAH AVAAAAAASP RGIINVDTNS PRNCLLVDGN TFSSQIQISS  180
PRNLGLKRRK SQAKKVVCIP APAAMNSRSS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR  240
CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPIQRN ALAGSTRSSS SSTNPNSSKS  300
PTANANAVAT SIGSQNTTYL PSSATPPPPP PPVSVSSVKD ERGDDMELEN VEDDDDIAPY  360
RPELHDHQNQ PDDFFADLEE LEGDSLSMLL SQGCAGDGKD KKMASDGISD FFGWSGDNSN  420
NNNNNDDQES RSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-25	190	276	2	79	Disease resistance protein RRS1
5w3x_D	1e-25	190	276	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g038430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228343	0.0	AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBank	BT006468	0.0	BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460874.1	0.0	PREDICTED: probable WRKY transcription factor 14
Swissprot	Q9SA80	0.0	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A384KXJ4	0.0	A0A384KXJ4_ARATH; WRKY14
TrEMBL	Q0WRG6	0.0	Q0WRG6_ARATH; Putative DNA-binding protein
STRING	XP_010460874.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	0.0	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]