PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g039330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 222aa MW: 26385 Da PI: 10.0198

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g039330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.4	9.1e-19	103	191	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + Csa14g039330.1 103 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 191 ************6666666554455555556666666558999**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.806	95	176	IPR017877	Myb-like domain
Pfam	PF13837	4.5E-14	102	191	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSNKP 60 AELRWKWIED YCWRKGYYFK KKKNMADQSG GLVMMREYRK GNWTLNETMV LIEAKKMDDE 120 RRMRRSIGLP PPEQQQDSRS SNKPAELRWK WIEDYCWRKG CMRSQNQCND KWDNLMRDYK 180 KVREYERRRV ESSFTAAESS SSSAAAAAAS AGDTPSYWKM EK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g039330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007654	1e-137	AC007654.2 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence.
GenBank	AK229384	1e-137	AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
GenBank	CP002684	1e-137	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478580.1	8e-81	PREDICTED: putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3
TrEMBL	A0A087HS01	6e-74	A0A087HS01_ARAAL; Uncharacterized protein
STRING	XP_010463038.1	4e-80	(Camelina sativa)
STRING	XP_010478578.1	4e-80	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	9e-56	Trihelix family protein