PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 395aa    MW: 41440.6 Da    PI: 8.1293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-0995118125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +kt+lC+ f++ GtC+y  +C+FaH
  Csa14g042310.1  95 FKTKLCCKFRA-GTCPYVTNCNFAH 118
                     69*********.************* PP
2zf-CCCH42.51.1e-13271296126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Csa14g042310.1 271 WKTRICNKWEITGYCPFGAKCHFAHG 296
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1392127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-792125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67194121IPR000571Zinc finger, CCCH-type
SMARTSM003560.003994120IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-795118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7175202IPR000571Zinc finger, CCCH-type
SMARTSM003560.47175202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244175203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8176202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-17266300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.45E-9266301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178270298IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9270297IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11271296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRVWAVN PDNVSGDNNG  60
PPNKKTRGSP SSSSATTTTT SAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV  120
EELRRPPPNW QEIVTAHEEE RSGGMGTPTV AVPEVPREEF QIPSLVSSTA ESGRSFKGRH  180
CKKFYTEEGC PYGESCTFLH DEASRNRESV AISLGPGGYG SGGGSGGGGS ASGAGGSASG  240
AGGGGNSNVV VLGGGAGGSG SGIHIVKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL  300
HRFGGGLVEG EGKDGVSPNP DTKQTGQNPK GHSDTTTILS PGVPHNVDAS YHSGVALQRA  360
TSAVTQKPGI RTHQKWKGPA KISRIYGDWI DDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461055.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLR0GQ620.0R0GQ62_9BRAS; Uncharacterized protein
STRINGXP_010461055.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein