PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 146aa    MW: 16844.6 Da    PI: 4.3334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.9e-10640136
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevike 36
                    lppGfrFhP deelv +yL+++ eg ++el e+i++
  Csa14g042520.1  6 LPPGFRFHPADEELVGYYLHRRNEGLEIEL-EMIPN 40
                    79************************9988.55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-9440IPR003441NAC domain
PfamPF023655.1E-8771IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVGSSLPPGF RFHPADEELV GYYLHRRNEG LEIELEMIPN GFIQRNPSCR IEIWNGFSSG  60
IATENTRATK SETTHRSITF LQGNSQSQIE EDSGFQIFAS PEFDYPPEFF AADLNFDWEL  120
ENPFMFDYHS EAHMNNEVMN YHILR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026843e-41CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D143e-41AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890994.12e-26NAC domain-containing protein 86
TrEMBLA0A1J3H6A84e-25A0A1J3H6A8_NOCCA; NAC domain-containing protein 86
STRINGXP_010463078.16e-65(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.16e-26NAC domain containing protein 11