PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g042950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27093.8 Da    PI: 9.4247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g042950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-172466950
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    +++ ++ R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa14g042950.1 24 KTTNLALREQTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 66
                    6788999*****************************9746887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-61267IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.6241361IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-1417101IPR002100Transcription factor, MADS-box
CDDcd002667.75E-192093No hitNo description
PfamPF003192.3E-123162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLTKDKTTKL FSVRNRRCFK KQPKTTNLAL REQTMFKKAS ELSILCDVEV CVIYYNRDGE  60
LVRTWPEDQS KVRDMAERFS KLNDRERRKK STNLSFFLNK KTLKDKKSSF DIMDNKFSEN  120
VLEMEASLES SIRVLQDKIL RLQNQTEPDQ NPVVSSAGFF TTLMSGGVSK TEQYLSTPSL  180
TQQHQSKVSV FLYNHDNGSF CQIPDSVSTF DPSTSSASLG VQGGSNIFDL PIPFWPI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g042950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461120.11e-176PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H92e-77AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1191e-100R0H119_9BRAS; Uncharacterized protein
STRINGXP_010461120.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.18e-80AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]