PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g046810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20590.6 Da    PI: 8.7372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g046810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.2e-131563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ien+  r++tf +R++ i  K +ELS LC+a v  +++s++g  y++
  Csa14g046810.1 15 KKIENYVDRTITFYRRKQKIYTKLSELSLLCGAAVGFLVYSNSGIPYTF 63
                    68******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.245767IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-18881IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-11929IPR002100Transcription factor, MADS-box
PfamPF003193.9E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSRKTNGNQ KINMKKIENY VDRTITFYRR KQKIYTKLSE LSLLCGAAVG FLVYSNSGIP  60
YTFGSPSFEV VAKRFLNGEG SSSTSLLQQS NIDVQNKEKM EELCKVYNNI LEKVDAEKQK  120
GMAMAKAEAE ALLVEKDAWW RVDPTTVKDK EVLKQLLAKY EDLYEKLCDE VVAKNQIENA  180
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g046810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463147.11e-121PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLD7LMQ21e-64D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010463147.11e-120(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-55AGAMOUS-like 64