PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g049830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 425aa MW: 45375.7 Da PI: 9.9414

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g049830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.2e-14	346	401	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ + ++ ++ ++ + Csa14g049830.1 346 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQAKIMEMQKNQE 401 79***************************************999888888876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-13	342	406	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.346	344	407	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-14	346	396	No hit	No description
Pfam	PF00170	3.3E-12	346	402	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-10	346	395	No hit	No description
CDD	cd14707	1.07E-27	346	400	No hit	No description
PROSITE pattern	PS00036	0	349	364	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDGNMNFKNN NLGNEPPGDG GGLGGLTRPG LTRQGSIYSL TFDEFQSSLG KDFGSMNMDE 60 LLKNIWTAEE TQAMASGMVP VAGGGQEGLQ LQKQGSLTLP RTLSQMTVDQ VWKDLSKVGN 120 SGGGGTNLSQ AQQVQAQNQS QSQSQSQRQQ TLGEVTLEEF LVRAGVVREE AQIAAKAQIA 180 ENNKAGYFGN DANTGFSVGF QQPSPRVVAA GVNPLQVQGS SLPLNVNGAR STYQQPQQQQ 240 PTIMPKQPAF GYGTQIGQLN SPGIRGGGIM GFGDQSQTNN MGLVNGGAAA IPGAVGVDAV 300 SPVTPLSSEG IGKSNGDCSS LSPSPYMFNG GVRGRKSGTV EKVVERRQRR MIKNRESAAR 360 SRARKQAYTV ELEAEVAKLK EENDELQRKQ AKIMEMQKNQ EMELRNLVQG GPKKRLRRTE 420 SGPW*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDGNMNFKNN NLGNEPPGDG GGLGGLTRPG LTRQGSIYSL TFDEFQSSLG KDFGSMNMDE  60
LLKNIWTAEE TQAMASGMVP VAGGGQEGLQ LQKQGSLTLP RTLSQMTVDQ VWKDLSKVGN  120
SGGGGTNLSQ AQQVQAQNQS QSQSQSQRQQ TLGEVTLEEF LVRAGVVREE AQIAAKAQIA  180
ENNKAGYFGN DANTGFSVGF QQPSPRVVAA GVNPLQVQGS SLPLNVNGAR STYQQPQQQQ  240
PTIMPKQPAF GYGTQIGQLN SPGIRGGGIM GFGDQSQTNN MGLVNGGAAA IPGAVGVDAV  300
SPVTPLSSEG IGKSNGDCSS LSPSPYMFNG GVRGRKSGTV EKVVERRQRR MIKNRESAAR  360
SRARKQAYTV ELEAEVAKLK EENDELQRKQ AKIMEMQKNQ EMELRNLVQG GPKKRLRRTE  420
SGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g049830.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017160	0.0	AB017160.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 1 (AREB1), complete cds.
GenBank	AF093545	0.0	AF093545.1 Arabidopsis thaliana clone 2 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	BT026443	0.0	BT026443.1 Arabidopsis thaliana At1g45249 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461496.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_010461497.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	0.0	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	R0GWZ7	0.0	R0GWZ7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010461496.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-168	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]