PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g051750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 563aa    MW: 62042.7 Da    PI: 10.0037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g051750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05321343223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L+ H+ + H
  Csa14g051750.1 321 ACPQCGEVFPKLESLEIHQAVrH 343
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.663320348IPR007087Zinc finger, C2H2
PROSITE patternPS000280320343IPR007087Zinc finger, C2H2
SuperFamilySSF563991.82E-20345558No hitNo description
Gene3DG3DSA:3.90.228.106.6E-12349559IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAPLPFIPET THKQRRLSSD PKKKNKKKKT SQPPPQTQTQ KLKQKTVPST SSSSSSSWSQ  60
IKNLLSCKQI EGPRVHEPSK ITSSSCGSSL CKFSDVIYGN ARVIHCSDHS PESSNLGQDA  120
RECNLVFNSI FAFFDILFFV MAPLPFIPET THKQRRLSSD PKKKNKKKKT SQPPPQTQTQ  180
KLKQKTVPST SSSSSSSWSQ IKNLLSCKQI EGPRVHEPSK ITSSSCGSSL CKFSDVIYGN  240
ARVIHCSDHS PESSNLGQDA RLLTRKPVNR ESSSSVRSNG CGAYSSYSTS KAMHFRKLSG  300
CYECHMIVDP SRYPIAPRIC ACPQCGEVFP KLESLEIHQA VRHAVSELGP EDSGRNIVDI  360
IFKSSWLRKD SPIYKIERIL KVHNTQRTIQ RFEDCRDVIK SHAHASPRKE PRSAADGNEL  420
LRFHCTTVSC SLGSRGSTSL CSAVPGCRVC TIIRHGFHAK TVRLGNGEGK EEIKGVRTTA  480
SSGRAHDVLR CFDQRRAMLV CRVIAGRVRR VQGDVPEDES ASGSYDSVAG PAGVYTSLDD  540
LVVFNPKAIL SCFVVIYKVS EA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154168RRLSSDPKKKNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g051750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461583.10.0PREDICTED: uncharacterized protein LOC104742289
TrEMBLR0IT110.0R0IT11_9BRAS; Uncharacterized protein
STRINGXP_010461583.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-146C2H2-like zinc finger protein