PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g053130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 90aa    MW: 9939.53 Da    PI: 10.1625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g053130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-095881326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++C++f+r+G Ck G++CkF H+
  Csa14g053130.1 58 KAICPHFSRFGLCKSGPTCKFDHS 81
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035611935IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.851037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-75481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2025583IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-45582IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-56083IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSDKKLPEHP GKRECGTYLI TGNCNLKKRC KYHQPKNITP IEPGLTLNEN GLPLRPNKAI  60
CPHFSRFGLC KSGPTCKFDH SSSSSRSKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g053130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091496.12e-59PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU87e-38C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT253e-37R0GT25_9BRAS; Uncharacterized protein
STRINGXP_006306053.14e-38(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.17e-40C3H family protein