PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g053140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 94aa    MW: 10085.5 Da    PI: 8.853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g053140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-071036127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++ tG C+  ++Ck++H++
  Csa14g053140.1 10 PGKRECGTYLITGNCNLKNKCKYHHPK 36
                    5789*********************96 PP
2zf-CCCH29.61.2e-095881326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++f+r+G Ck G++CkF H+
  Csa14g053140.1 58 QAVCPDFSRFGLCKSGPTCKFDHS 81
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.32936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2211037IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-51136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-51236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-75381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0425583IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-45582IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-56083IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSDKKLPEHP GKRECGTYLI TGNCNLKNKC KYHHPKNITP IEPGLALNDN GLPLRPNQAV  60
CPDFSRFGLC KSGPTCKFDH STEPSSSSSS GGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g053140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091473.17e-63PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU81e-38C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT252e-39R0GT25_9BRAS; Uncharacterized protein
STRINGXP_006306053.13e-40(Capsella rubella)
STRINGXP_010479232.12e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.11e-40C3H family protein