PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g053190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 106aa    MW: 11534.4 Da    PI: 10.2372
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g053190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-072248127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++ tG C+   rCk++H++
  Csa14g053190.1 22 PGKPECGYYLITGNCNLKKRCKYHHPK 48
                    5789*********************96 PP
2zf-CCCH291.9e-097093326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++f+r+G Ck G+ CkF H+
  Csa14g053190.1 70 QAVCPHFSRFGLCKSGPACKFDHS 93
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2862149IPR000571Zinc finger, CCCH-type
SMARTSM003560.00362148IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-52348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-52549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-76593IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0986795IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-46794IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-77093IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-47294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MQTIPSLIRG GNMSDKKLPE RPGKPECGYY LITGNCNLKK RCKYHHPKNI IPIEPGLALN  60
DNGLPLRPNQ AVCPHFSRFG LCKSGPACKF DHSTKPSSSS SSARK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g053190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091487.18e-63PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU88e-42C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT254e-44R0GT25_9BRAS; Uncharacterized protein
STRINGXP_006306053.16e-45(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.17e-44C3H family protein