PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g055030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 318aa    MW: 34895.2 Da    PI: 9.5759
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g055030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101056445
                     S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                     W+ eE++ + +a++++  +      +Wk+ a++++  +tl+q+k+++q
   Csa14g055030.1 10 WSREEEKAFENAIALHCVEeditddQWKKMASMVP-SKTLEQVKNHYQ 56
                     ****************999****************.***********9 PP
2Myb_DNA-binding38.82.1e-12138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   Csa14g055030.1 138 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 182
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.422563IPR017884SANT domain
SMARTSM007176.8E-8661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-51059IPR009057Homeodomain-like
CDDcd001679.94E-91059No hitNo description
SuperFamilySSF466892.15E-91066IPR009057Homeodomain-like
PfamPF002498.5E-81056IPR001005SANT/Myb domain
PROSITE profilePS5129416.873131187IPR017930Myb domain
SuperFamilySSF466897.9E-17133188IPR009057Homeodomain-like
SMARTSM007172.3E-10135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.5E-17135185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.0E-11136181IPR009057Homeodomain-like
CDDcd001671.16E-9138183No hitNo description
PfamPF002498.0E-11138182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESVVAAAIW SREEEKAFEN AIALHCVEED ITDDQWKKMA SMVPSKTLEQ VKNHYQILLE  60
DVKAIENGQV PLPRYHHHRK GLIVDEAAAT SPANRDSHSS GSSEKKPNHG TSGISSSNGG  120
GGRSSGSRAE QERRKGIPWT EEEHRLFLLG LDKFGKGDWR SISRNFVISR TPTQVASHAQ  180
KYFIRLNSMN RDRRRSSIHD ITTVNNQPPA VTGGQQQQQQ VVKHRPAQPQ PQPQPQPQPQ  240
PHHPPTMAGL GMYGNAPVGQ PIIAPHDHMG SAVGTPVMLP PPMGTHHHHH LGVAPYAVPA  300
YPVPPLPQPH PAPSTMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1310861184RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g055030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869060.0AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195280.0AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248620.0BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461715.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLR0IMJ41e-167R0IMJ4_9BRAS; Uncharacterized protein
STRINGXP_010461715.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-138MYB family protein