PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g055380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 648aa    MW: 74621.5 Da    PI: 9.4247
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g055380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.74.6e-22333390155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wt++LH++F+ea+e  GG+ekA Pk +l++   mk++gLt+++v+SHLQk+R+
  Csa14g055380.1 333 KQRMTWTKDLHKKFLEAIEINGGIEKANPKVLLDClqgMKIQGLTRNNVASHLQKHRI 390
                     79****************************986543339******************7 PP
2Response_reg56.71.4e-1919514108
                     HHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
    Response_reg  14 lrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                     +++++++++y +v+  +d+++al+ l  +++d+++++ D  mp++dGl++lk+i+++  +lp++++++ ++ e + +a+  Ga d++ Kp+++++
  Csa14g055380.1   1 MKRIMRQHDY-QVTIETDAKKALAFLtsCKHDINIVIWDYHMPEIDGLQALKSIASKM-DLPVMIMSDDNQTESVMKAIVHGACDYVLKPVKEDK 93 
                     678999****.999999999999999888999**********************9866.9********************************999 PP

                     HH CS
    Response_reg 107 lv 108
                     + 
  Csa14g055380.1  94 IA 95 
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000724.7E-16196IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.42E-221110IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-251123No hitNo description
SMARTSM004481.1E-4198IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.92E-161101No hitNo description
PROSITE profilePS5011032.721102IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.602.6E-20331394IPR009057Homeodomain-like
SuperFamilySSF466891.97E-12331393IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16333390IPR006447Myb domain, plants
PfamPF002495.4E-6335389IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MKRIMRQHDY QVTIETDAKK ALAFLTSCKH DINIVIWDYH MPEIDGLQAL KSIASKMDLP  60
VMIMSDDNQT ESVMKAIVHG ACDYVLKPVK EDKIANLWQH IVRKEVMSKR NISPSVQSDL  120
AQTDGLKQGK VDSKIVDQEQ NIGKKEESTP TRPWTGEIQT VQSDLVQINV FDQRNEYPIT  180
INQDNGEQTF SKNIEGTTKR PLITWNGELQ PVQSDLLQFN VFNKHNYNHK TRNQDSGERN  240
IGKTKERVET RPWMKWTKEP QPFQFNPVHI NNLAQQNYYS KTINQEKGEE SSDKAAKKPR  300
MRAEEKELVQ TDDSNNGDSV EIIDKRVWKK TRKQRMTWTK DLHKKFLEAI EINGGIEKAN  360
PKVLLDCLQG MKIQGLTRNN VASHLQKHRI YLEEKQIPKQ AQNIGWSTQC GAAPSLQVVR  420
NGPARNPIQQ NQYQNRAVNP IQHNQYLNGA VNPIQQNHYQ NGAVNAIQQK QYQNGAVNPI  480
QQNQNGVVYS IQKNDQYQNR AVSPIQHNDQ YQNRAVNPIQ QNQYQNGAMN LIQHKQYQNG  540
VVNPIKQNQY QNEAVNPSQQ NHYHNRVVNP IQQNDHYQNG YLAMNKNPFI TNPSMPRVSY  600
FDNQPHQTQQ QQSSPQFSYL TSNEEPGKAS DIYAPDSQLI YPSLPYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g055380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160416e-46AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankCP0026846e-46CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096303.10.0PREDICTED: uncharacterized protein LOC104779235
TrEMBLR0IK330.0R0IK33_9BRAS; Uncharacterized protein
STRINGXP_010501906.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.21e-138response regulator 19