PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g055950.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 399aa MW: 43288.3 Da PI: 9.2865

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g055950.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.2	2.1e-14	319	369	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k+ Csa14g055950.1 319 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQAEIMKT 369 79***************************************9887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-13	315	380	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	317	380	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-13	319	375	No hit	No description
CDD	cd14707	1.31E-23	319	370	No hit	No description
Pfam	PF00170	3.4E-12	319	370	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.56E-10	319	368	No hit	No description
PROSITE pattern	PS00036	0	322	337	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGTHIDFDNL GVDSSGGNGC STYQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE 60 LLKNIWTAEE AQAFMTTTPS SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH 120 LNSKDGSNGN SRTDVPPERQ QTLGEMTLED FLLRAGVVKE DTNSTQQNDN SSGFYANNGA 180 AGLGFGFGQP NQNSIPFNGN NDSMIYNQAP GSALKVGGKM QQQQKPHQQQ QHPYQRLPPT 240 IFPKQANVAF APVNLVNRGL FDAGLDGPVN SNMGGAGVTV AATSPGTSSA ENNTWSSPVP 300 YVFGRGRRSN TGLEKVVERR QKRMIKNRES AARSRARKQA YTLELEAEIE SLKQLNQDLQ 360 KKQAEIMKTQ NSEVKELSKL LPCLAKTQCL RRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGTHIDFDNL GVDSSGGNGC STYQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE  60
LLKNIWTAEE AQAFMTTTPS SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH  120
LNSKDGSNGN SRTDVPPERQ QTLGEMTLED FLLRAGVVKE DTNSTQQNDN SSGFYANNGA  180
AGLGFGFGQP NQNSIPFNGN NDSMIYNQAP GSALKVGGKM QQQQKPHQQQ QHPYQRLPPT  240
IFPKQANVAF APVNLVNRGL FDAGLDGPVN SNMGGAGVTV AATSPGTSSA ENNTWSSPVP  300
YVFGRGRRSN TGLEKVVERR QKRMIKNRES AARSRARKQA YTLELEAEIE SLKQLNQDLQ  360
KKQAEIMKTQ NSEVKELSKL LPCLAKTQCL RRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g055950.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	0.0	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	0.0	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	0.0	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	0.0	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461819.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
Refseq	XP_010461820.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
Refseq	XP_019091727.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WH34	0.0	A0A178WH34_ARATH; AtABF1
STRING	XP_010461819.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]