PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g057260.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 326aa MW: 35843.9 Da PI: 9.9251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g057260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.8e-09	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE+ l+ +v ++G+g W+tI + Csa14g057260.1 5 KQKWTQEEESALKSGVIKHGPGKWRTILKD 34 79*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.618	1	51	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-9	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-9	4	50	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-6	5	33	IPR001005	SANT/Myb domain
CDD	cd11660	2.19E-14	6	72	No hit	No description
SMART	SM00526	1.3E-12	138	205	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.74E-15	141	220	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.0E-12	142	211	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.869	142	210	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.3E-7	147	203	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK VMIVSYPPLF 60 QLHDAADKWR NMSVMANGWG SREKSRLAVK RTLSLPRQEE NSLALTPSLQ SDEEMVDAKH 120 YSTTGSSALQ VQVSSTPAPR RPNVRLDSLI MEAIATMKEP GGCNKTTIGA YIEDQYHAPP 180 DFKRLLSTKL KYLTACGKLV KVKRRYRIPN STPLSSHKKK GPGMFTGRQR TSSLHSPKTD 240 RDETTFQTRS QVDAELARMK SMNVHEAAAV AAQAVAEAEA AMAEAEEAAK EAEVAEAEAE 300 AAQAFAEEAS KTLKGRNNCK VMIRA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g057260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATU83624	0.0	U83624.1 Arabidopsis thaliana telomere repeat binding factor 1 (TRB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461843.1	0.0	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_010461844.1	0.0	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_010461845.1	0.0	PREDICTED: telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	1e-162	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	R0GJQ0	1e-172	R0GJQ0_9BRAS; Uncharacterized protein
STRING	XP_010461843.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8722	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-158	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]