PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 227aa    MW: 25510.9 Da    PI: 6.9279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-1170116453
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                     ++  rE++RRdr+N++f eL ++l +    + +K +K++i   A++ +++
  Csa14g059380.1  70 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTEKVAIINDAIRMVNH 116
                     5678**********************8...8**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.92266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-769122No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1170139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1270136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-970116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIDGAF SDHNPTFPWQ IDGSSSVSVE VDGFLCDSDV IKEPGSRKRI  60
KTESCTGSSS KACREKQRRD RLNDKFTELS SILEPGRTPK TEKVAIINDA IRMVNHARDE  120
AQKLKDLNSS LQEKIKELKD EKSELRDEKH KLKIEKERIE QQLKEIKTQP QPPPCFLPNP  180
PTLSQAQAPG SKLVPFTTYP GFAMWQFMPP AAVDTSQDHV LRPPVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBankBT0062730.0BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461939.11e-167PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-157BH115_ARATH; Transcription factor bHLH115
TrEMBLR0GNJ41e-156R0GNJ4_9BRAS; Uncharacterized protein
STRINGXP_010461939.11e-167(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-144bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]