PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g059400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 224aa MW: 25153.6 Da PI: 4.4835

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g059400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	93	131	4	49
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 ++ rE++RRd +f eL ++l + + +K +K++i A++ Csa14g059400.1 93 SKACREKQRRD----KFTELSSILEPG---RTPKTEKVAIINDAIR 131 56789999996....69*******8...89********9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.34E-4	92	131	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVTDKSWLPE EDFKGLADNF FDNLVEHMDD FPLEDIETAD DDDEEDWDAG CYLDLEPGKF 60 KINVLVMVIS MFSSAARKFK GLETESCTAG SSSKACREKQ RRDKFTELSS ILEPGRTPKT 120 EKVAIINDAI RMERIEQQLK EIKTQPQPQP CFLPNPPTLS QAQAQAPGSK LVSFTTYPGF 180 AMWQSMPPAP VDTSQDHVLR LRLLKASSLS IIDCSGFFLR AFY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g059400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079828	4e-69	AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBank	AF488632	4e-69	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	4e-69	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	4e-69	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	CP002684	4e-69	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500676.1	1e-61	PREDICTED: transcription factor bHLH115
Swissprot	Q9C682	4e-58	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A178W1E6	1e-55	A0A178W1E6_ARATH; BHLH115
STRING	XP_010500676.1	5e-61	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	3e-46	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]