PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 457aa    MW: 51920.2 Da    PI: 8.1949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011177196120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Csa14g059550.1 177 FSCPLCFKTFNRYNNMQMHM 196
                     89*****************9 PP
2zf-C2H212.50.00043261283123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  Csa14g059550.1 261 FACRRCGKAFAVKGDWRTHEKNC 283
                     78*****************9987 PP
3zf-C2H212.50.00043372394123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  Csa14g059550.1 372 FACRRCGKAFAVKGDWRTHEKNC 394
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-5177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66177204IPR007087Zinc finger, C2H2
SMARTSM003550.61177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SMARTSM00355280223256IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.09E-6243281No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5248281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767261281IPR007087Zinc finger, C2H2
SMARTSM0035590261281IPR015880Zinc finger, C2H2-like
SMARTSM00355280287310IPR015880Zinc finger, C2H2-like
SMARTSM00355280334367IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.09E-6354392No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5359392IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767372392IPR007087Zinc finger, C2H2
SMARTSM0035590372392IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSNPACTNLL NNGCDHNNIN YSTSLSYIYN SQGSFYYPNT TNPSYTNPTP TTSTFPNSPP  60
LREALPLLSL SPIRHQEQQD RGYFMDTDQI SSSIFLDDPH VTVDLHLGLP NYGVGESIGS  120
YIAPDVTTEE QEQDHDQGVE ITVESHLHDD DDHGDLQRCH HYWIPTPSQI LIGPTQFSCP  180
LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCFCCAPGC KNNIDHPRAK  240
PLKDFRTLQT HYKRKHGSRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS  300
LKDHMHMWGH GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ  360
THYKRKHGSR PFACRRCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR SLKDHVKAFG  420
NGHVPMGIDS FGGDLEDYYE AASDIEQQDD SNNNEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461955.10.0PREDICTED: zinc finger protein WIP5-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLR0IQE20.0R0IQE2_9BRAS; Uncharacterized protein
STRINGXP_010461955.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]