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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa14g064660.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 162aa MW: 17026 Da PI: 8.499 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa14g064660.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 35.4 | 2.9e-11 | 91 | 152 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnk 59
+W+++ +++Li+a ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k
Csa14g064660.1 91 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKK 152
8*************************************99999999***********99988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MEEDDEIQSI HSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPTAASVSSQ SPSRNALALV 60
VHTPAVTGGG GSGNRNGRGG SGGGGGGRDD CWSEEATKVL IDAWGDRFSE PGKGTLKQQH 120
WKEVAEIVNK SRQCKYPKTD IQCKNRIDTV KKKIVINALD R*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 87 | RGGSGGGGGGR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF360325 | 1e-147 | AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
| GenBank | AY056333 | 1e-147 | AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
| GenBank | AY084772 | 1e-147 | AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence. |
| GenBank | CP002684 | 1e-147 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F15I1 | 1e-147 | AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence. |
