PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g064970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 464aa MW: 51886.6 Da PI: 8.5593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g064970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Csa14g064970.1 94 FICEVCNKGFQRDQNLQLHKRGH 116 89******************988 PP
2	zf-C2H2	14.2	0.00013	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Csa14g064970.1 171 WKCEKCSKKYAVQSDWKAHAKTC 193 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-6	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.31E-7	93	116	No hit	No description
PROSITE profile	PS50157	10.824	94	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.026	94	116	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.5E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	41	136	166	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	159	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.31E-7	166	191	No hit	No description
SMART	SM00355	140	171	191	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MMMNRDMIFH HQQQQQQVEE NMSNLTSASG DQASVSSGNR TETSGSYINQ QQQQEQCFVP 60 QSSLKRKRNQ PGNPDPEAEV IALSPKTLMA TNRFICEVCN KGFQRDQNLQ LHKRGHNLPW 120 KLKQRSNKDV VRKKVYVCPE PGCVHSHPSR ALGDLTGIKK HFFRKHGEKK WKCEKCSKKY 180 AVQSDWKAHA KTCGTKEYKC DCGTLFSRRD SFITHRAFCD ALAKESARAI PNPILIQSSV 240 SPSHHDHHHH HHHPHQTVQQ NINFSSSSQN IISNNNLHHG PMKQEESQHH HFQNIPPWLV 300 SSNPNPNGNN GNLFPPLASS APTGTGRSNF HRSSPAMSAT ALLQKAAQMG STKSKTPEEE 360 ERSSSYNNLI TTTMAAMMTS PPEPGYGFQE YYMMNHQHHG GGEAFNGSFV ADKNEVVDDG 420 GGETRDFLGL RSLMSHNEIL SFANNLGNCL NGSASEEQHS HQD*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MMMNRDMIFH HQQQQQQVEE NMSNLTSASG DQASVSSGNR TETSGSYINQ QQQQEQCFVP  60
QSSLKRKRNQ PGNPDPEAEV IALSPKTLMA TNRFICEVCN KGFQRDQNLQ LHKRGHNLPW  120
KLKQRSNKDV VRKKVYVCPE PGCVHSHPSR ALGDLTGIKK HFFRKHGEKK WKCEKCSKKY  180
AVQSDWKAHA KTCGTKEYKC DCGTLFSRRD SFITHRAFCD ALAKESARAI PNPILIQSSV  240
SPSHHDHHHH HHHPHQTVQQ NINFSSSSQN IISNNNLHHG PMKQEESQHH HFQNIPPWLV  300
SSNPNPNGNN GNLFPPLASS APTGTGRSNF HRSSPAMSAT ALLQKAAQMG STKSKTPEEE  360
ERSSSYNNLI TTTMAAMMTS PPEPGYGFQE YYMMNHQHHG GGEAFNGSFV ADKNEVVDDG  420
GGETRDFLGL RSLMSHNEIL SFANNLGNCL NGSASEEQHS HQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-36	167	228	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-36	167	228	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	133	KLKQRSNKDVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g064970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK227194	0.0	AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBank	AY090998	0.0	AY090998.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
GenBank	AY150421	0.0	AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462351.1	0.0	PREDICTED: protein indeterminate-domain 7 isoform X1
Refseq	XP_010462352.1	0.0	PREDICTED: protein indeterminate-domain 7 isoform X2
Refseq	XP_010462353.1	0.0	PREDICTED: protein indeterminate-domain 7 isoform X2
Swissprot	Q8H1F5	0.0	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	D7KM56	0.0	D7KM56_ARALL; Predicted protein
STRING	XP_010462351.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	0.0	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]