PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g067460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 136aa MW: 16020.2 Da PI: 8.998

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g067460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	169.6	2.5e-52	1	135	241	374
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 ++e+ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++++GF +vp++++a + Csa14g067460.1 1 MAEREANHGDHSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEARERKQRHRRFEIWEEMMKRFGFVNVPIGSFALS 95 68******************************************************************************************* PP GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 qaklllr ++ s+gy+++ ++sl+lgW++r L+svS+W+ Csa14g067460.1 96 QAKLLLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSWK 135 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.3E-50	1	135	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	21.113	1	114	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MAEREANHGD HSFLNRFSEA VDHYVAIFDS LEATLPPNSR ERLTLEQRWF GKEIFDVVAA 60 EARERKQRHR RFEIWEEMMK RFGFVNVPIG SFALSQAKLL LRLHYPSEGY NLQFLNNSLF 120 LGWQNRLLFS VSSWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-22	1	134	248	378	Protein SCARECROW
5b3h_A	2e-22	1	134	247	377	Protein SCARECROW
5b3h_D	2e-22	1	134	247	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g067460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002328	0.0	AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBank	AC005223	0.0	AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBank	AY196482	0.0	AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBank	BT026519	0.0	BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480099.1	4e-94	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-90	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	D7KMZ6	6e-89	D7KMZ6_ARALL; Uncharacterized protein
STRING	XP_010480099.1	1e-93	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	6e-93	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]