PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15223s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 85aa    MW: 9873.44 Da    PI: 8.8349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15223s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.3e-13327226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    ktelC+ +++tGtC+y d C+FaHg
  Csa15223s010.1  3 KTELCNKWQETGTCPYDDHCQFAHG 27
                    9***********************8 PP
2zf-CCCH24.16.3e-084065126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykte Cr  +++ +C+yG rC+F H+
  Csa15223s010.1 40 YKTEVCRMVLAGDICPYGHRCHFRHS 65
                    9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.906129IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-11233IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-17334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-103570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-143568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2723967IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-53966IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-54065IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MTKTELCNKW QETGTCPYDD HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC  60
HFRHSLSEQE KLVAAGYKPK SSLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22368570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15223s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0164471e-114AC016447.5 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence.
GenBankBT0260771e-114BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankCP0026841e-114CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ0565141e-114DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
GenBankDQ4464101e-114DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511807.14e-60PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F56e-58C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A178WL361e-55A0A178WL36_ARATH; Uncharacterized protein
STRINGXP_010511807.11e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-60C3H family protein