PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15491s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 60aa    MW: 6886.83 Da    PI: 10.969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15491s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   Csa15491s010.1  2 SPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 43
                     89****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.58E-12143No hitNo description
PROSITE profilePS5129423.345147IPR017930Myb domain
SMARTSM007171.2E-10145IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-14250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-22244IPR009057Homeodomain-like
PfamPF002495.0E-15243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MSPQEQDLII RMHKLLGNRW SLIAGRLPGR TDNEVKNYWN THLNKKSSSR KQNAPESIGA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15491s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196371e-59AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442796.13e-36PREDICTED: transcription factor MYB82-like
RefseqXP_010445061.12e-36PREDICTED: transcription factor MYB82-like
RefseqXP_010482628.13e-36PREDICTED: transcription factor MYB82 isoform X1
SwissprotQ9LTF74e-34MYB82_ARATH; Transcription factor MYB82
TrEMBLD7MS686e-35D7MS68_ARALL; Predicted protein
STRINGXP_010442796.11e-35(Camelina sativa)
STRINGXP_010445061.18e-36(Camelina sativa)
STRINGXP_010482628.11e-35(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-36myb domain protein 82