PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g001120.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family E2F/DP
Protein Properties Length: 361aa    MW: 40773.9 Da    PI: 8.7592
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g001120.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.11.3e-222287171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rkeksL+ll ++fl+l+++ +++ + l+++a +L    v  +rRRiYD++N+Le+++++++k kn ++wkg
  Csa15g001120.2 22 RKEKSLGLLVSNFLRLYNRDDADLIGLDHAAGKL---GV--ERRRIYDVVNILESIGIVARKGKNMYSWKG 87
                    79********************************...**..****************************98 PP
2E2F_TDP85.15.4e-27151231171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     +keksL+ll+q+f+k++ +s+++ +tl+++ak+L+s+     ++++k+RR+YDi+NV++++nliek     ++k+++rw g
  Csa15g001120.2 151 KKEKSLWLLSQNFVKMFLCSDDDLITLDSAAKALLSDsqdpvHMRTKVRRLYDIANVFSSMNLIEKtqipeTKKPAYRWLG 231
                     69********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-231988IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.96E-152185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-262287IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-182387IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-22149233IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-31151231IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.5E-20152231IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-13153232IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSSYAMVSQ DAESLALQTY SRKEKSLGLL VSNFLRLYNR DDADLIGLDH AAGKLGVERR  60
RIYDVVNILE SIGIVARKGK NMYSWKGFGE VPRSLDKLKE EGMREKLCIS SSNNSDKVLD  120
DVEREESSFS LTPDDQETSS SSKIVSFADQ KKEKSLWLLS QNFVKMFLCS DDDLITLDSA  180
AKALLSDSQD PVHMRTKVRR LYDIANVFSS MNLIEKTQIP ETKKPAYRWL GSESIAETGT  240
SLFNSDEPKK RVFGTEITNL RAKRNKTDCS SNGKQIGYKK HDDENTEQES KPAASKYVFG  300
PSFPTGAASK KNENVRKGRL QEIESLASTY KPQYCNKEIT SLLGHFTETW KRWYAELDRK  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-32212233228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g001120.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463536.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
SwissprotQ8RWL00.0E2FF_ARATH; E2F transcription factor-like E2FF
TrEMBLR0HMF00.0R0HMF0_9BRAS; Uncharacterized protein
STRINGXP_010463536.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.10.0DP-E2F-like protein 3
Publications ? help Back to Top
  1. Dohmann EM, et al.
    The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability.
    Development, 2008. 135(11): p. 2013-22
    [PMID:18434413]