PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g005310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 680aa MW: 75357.7 Da PI: 5.0684

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g005310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.3	9.5e-30	481	533	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGG AtPk++l+lm+ +gLt++hvkSHLQkYR+ Csa15g005310.1 481 KQRMRWTPELHEAFVEAVNQLGGG--ATPKAVLKLMNSPGLTIYHVKSHLQKYRS 533 79*****************996..8*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.085	478	536	IPR017930	Myb domain
SuperFamily	SSF46689	1.43E-16	479	535	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	480	535	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-22	481	533	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-12	483	532	IPR001005	SANT/Myb domain
Pfam	PF14379	6.0E-21	569	615	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSSSFATLEE RHHRNFPNIL WVSSGQELMN NNPVPCQAFP LVSGGSSGGN SFSSSSGFCN 60 GVYVSSSSQA RPPVSTVPRG RTTVAHVSEE GQRQECSFDT QSLQVINQPQ EQRNMTWSLD 120 QLQGFFDIPV PVPQAESSRT MVSSKEVHSK NEWPDWADQL MSDDGLEPWS ELLGDSNALN 180 LDSKIPTPSS DMVRQEIVLN NQHQLSSQYC TYYSMTLARD YSFPTAMSSS FATLEERHHR 240 NFPNILWVSS GQELMNNNPV PCQAFPLVSG GSSGGNSFSS SSGFCNGVYV SSSSQARPPV 300 STVPRGRTTV AHVSEEGQRQ ECSFDTQSLQ VINQPQEQRN MTWSLDQLQG FFDIPVPVPQ 360 AESSRTMVSS KEVHSKNEWP DWADQLMSDD GLEPWSELLG DSNALNLDSK IPTPSSDMVR 420 QEIVLNNQHQ VDPSMDPFNA KNSPASSMTM DPFNAKNSPA SSMTMDPSNA KNSPASSMTS 480 KQRMRWTPEL HEAFVEAVNQ LGGGATPKAV LKLMNSPGLT IYHVKSHLQK YRSTTRYKPD 540 LSENKEEEPP VKNLKTIEDI KSLDLKTSIE ITEALRLQMK VQKQLHEQLE IQRSLQLRME 600 EQGRCLQMMI EKQQKIQESS SMPEAEASAP PQKPSQVFLP DKATNSEPST ITQTLQSGSN 660 TMSQTESASG SNRKRVRED*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSSSFATLEE RHHRNFPNIL WVSSGQELMN NNPVPCQAFP LVSGGSSGGN SFSSSSGFCN  60
GVYVSSSSQA RPPVSTVPRG RTTVAHVSEE GQRQECSFDT QSLQVINQPQ EQRNMTWSLD  120
QLQGFFDIPV PVPQAESSRT MVSSKEVHSK NEWPDWADQL MSDDGLEPWS ELLGDSNALN  180
LDSKIPTPSS DMVRQEIVLN NQHQLSSQYC TYYSMTLARD YSFPTAMSSS FATLEERHHR  240
NFPNILWVSS GQELMNNNPV PCQAFPLVSG GSSGGNSFSS SSGFCNGVYV SSSSQARPPV  300
STVPRGRTTV AHVSEEGQRQ ECSFDTQSLQ VINQPQEQRN MTWSLDQLQG FFDIPVPVPQ  360
AESSRTMVSS KEVHSKNEWP DWADQLMSDD GLEPWSELLG DSNALNLDSK IPTPSSDMVR  420
QEIVLNNQHQ VDPSMDPFNA KNSPASSMTM DPFNAKNSPA SSMTMDPSNA KNSPASSMTS  480
KQRMRWTPEL HEAFVEAVNQ LGGGATPKAV LKLMNSPGLT IYHVKSHLQK YRSTTRYKPD  540
LSENKEEEPP VKNLKTIEDI KSLDLKTSIE ITEALRLQMK VQKQLHEQLE IQRSLQLRME  600
EQGRCLQMMI EKQQKIQESS SMPEAEASAP PQKPSQVFLP DKATNSEPST ITQTLQSGSN  660
TMSQTESASG SNRKRVRED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	481	538	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g005310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010463921.1	0.0	PREDICTED: myb family transcription factor PHL13-like isoform X2
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	D7L252	0.0	D7L252_ARALL; Transcription factor
STRING	XP_010463920.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.1	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]