PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g005640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 831aa    MW: 92297.2 Da    PI: 10.0675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g005640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26.1e-27271324355
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYege
  Csa15g005640.1 271 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGE 324
                     9*************************988***********************97 PP
2WRKY95.82.9e-30556613359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Csa15g005640.1 556 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 613
                     9*************************988****************************7 PP
3WRKY95.82.9e-30763820359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Csa15g005640.1 763 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 820
                     9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.6E-15230267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-28257324IPR003657WRKY domain
PROSITE profilePS5081126.188264324IPR003657WRKY domain
SuperFamilySSF1182901.31E-22267324IPR003657WRKY domain
SMARTSM007748.3E-31269326IPR003657WRKY domain
PfamPF031061.2E-22271324IPR003657WRKY domain
PfamPF105337.6E-15515552IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-32542613IPR003657WRKY domain
PROSITE profilePS5081129.356549615IPR003657WRKY domain
SuperFamilySSF1182906.93E-26552613IPR003657WRKY domain
SMARTSM007744.6E-37554614IPR003657WRKY domain
PfamPF031065.1E-26556612IPR003657WRKY domain
PfamPF105337.6E-15722759IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-32749820IPR003657WRKY domain
PROSITE profilePS5081129.356756822IPR003657WRKY domain
SuperFamilySSF1182906.93E-26759820IPR003657WRKY domain
SMARTSM007744.6E-37761821IPR003657WRKY domain
PfamPF031065.1E-26763819IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MEEVEAANKS AIETCHGVLN LLSQKAGSDP KSLVVETGEA VSKFKRVASL LSRGLGHGKF  60
RSINKFRSSF PQHIFLESPI CCVANDVTGD YTQVLAPEPL QMVPASAVYD GIEPKHHMGH  120
PPPPLMLTRN MCVDKSYLEL KQPPPFRAPY QLIHNHQQIA YSRSNSGVNL KFDGGSGSSC  180
YTPSVSNGSR SFVSSLSMDA SVADYDRNSF HLTGLSRGSD HISQHSRKMC SGSMKCGSRS  240
KCHCSKKRKL RVKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVERC IDETSMLIVT YEGEAVSKFK RVASLLSRGL GHGKFRSINK FRSSFPQHIF  360
LESPICCVAN DVTGDYTQVL APEPLQMVPA SAVYDGIEPK HHMGHPPPPL MLTRNMCVDK  420
SYLELKQPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGG SGSSCYTPSV SNGSRSFVSS  480
LSMDASVADY DRNSFHLTGL SRGSDHISQH SRKMCSGSMK CGSRSKCHCS KKRKLRVKRS  540
IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCIDETS  600
MLIVTYEGEH NHSRILFKKM VXMCVDKSYL ELKQPPPFRA PYQLIHNHQQ IAYSRSNSGV  660
NLKFDGGSGS SCYTPSVSNG SRSFVSSLSM DASVADYDRN SFHLTGLSRG SDHISQHSRK  720
MCSGSMKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH  780
PRGYYKCSSV RGCPARKHVE RCIDETSMLI VTYEGEHNHS RILSSQSAHT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19262819771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g005640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048600.0AF404860.1 Arabidopsis thaliana WRKY transcription factor 39 (WRKY39) mRNA, complete cds.
GenBankAY0534200.0AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
GenBankAY1335860.0AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463951.10.0PREDICTED: probable WRKY transcription factor 39 isoform X1
RefseqXP_010468009.20.0PREDICTED: probable WRKY transcription factor 39 isoform X2
SwissprotQ9SR070.0WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD7L2W90.0D7L2W9_ARALL; WRKY DNA-binding protein 39
TrEMBLR0I6V70.0R0I6V7_9BRAS; Uncharacterized protein
STRINGXP_010463951.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-172WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]