PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g006640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 647aa    MW: 72158 Da    PI: 10.4866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g006640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-084576335
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgR 35
                      WT  E e+++da +++G + Wk++a+ +   R
   Csa15g006640.1 45 QWTRKELERFYDAYRKHGQE-WKKVAAAVRRSR 76
                     6*******************.*****9987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.33E-74491IPR009057Homeodomain-like
PfamPF002493.8E-64581IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAPAVRKSRS VNKRFTNESS PGKDAGKSRK NKQRKKKLSD KLGPQWTRKE LERFYDAYRK  60
HGQEWKKVAA AVRRSRSIDM VEALFNMNRA YLSLPEGTAS VAGLIAMMTD HYSVMEGSGS  120
EGEGQDASEV PRKEKKRKRA KPQLSDSREE VDVQHSVAST DGCLTFLKQA RANGTQRRAT  180
GKRTPRVPVQ TSYMGDDREG STPPNKRARK QFDANDDVAH FLALALTDAS RRGGSSKVSE  240
SPNRRTQLSD STPIKSWGNM SRTRKSQSKH CDNSIFKEWV GSSQERKLES DKDTALLMDM  300
EGVSEMEAPP KAKRFYKKKV KVEVEEAEGN DSDNNGECSA TEGIRIKSQR RKAAIEASRG  360
KHSPRSTKKK DKKLTSGDEF DALKALAELS ASMDPATLME SGPESSARLK EERTEYDMDE  420
KSSTPEATSS SSHEEKANAE PDDSLLHAIS SVENTNKRKP KPSRQASTDC DAVPTEKLQS  480
QTSGSLRRKR KPKVLGDEAP ADFSQNKSIN KKELHQDENN MKSLVRTKRA GQSPAQSKQL  540
YTVQALEESA TTSDKNRPVM DVIASTKEIS DSGPASVSQK HPNKRKISLK KSLQERAKSS  600
ETIHKASRSS RTLSVQEFFL KVEPLTSLLL RTFNIWLHHL VRKEKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141KKRKRAKP
2485491LRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g006640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834960.0AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468020.10.0PREDICTED: protein ALWAYS EARLY 2-like
SwissprotQ6A3330.0ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLR0HJB20.0R0HJB2_9BRAS; Uncharacterized protein
STRINGXP_010468020.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29622241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-44DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]