PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g006890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 224aa    MW: 25225.9 Da    PI: 6.3593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g006890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87e-12112206281
                     EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDf 79 
                     +k+lt+sdv+++ rl lpk+ a+eh               +   +++ ++t+ d ++  + +++++ + + g+yvl ++W k+Fv+ ++Lk+g +
  Csa15g006890.1 112 KKTLTNSDVGSQTRLLLPKEPANEHilkylteeeiklvedE--GHQGLKITVFDsTEKTTHQLRFKRWTSAGSYVLNNNWnKDFVQRKDLKAGKT 204
                     699**********************8876666666555321..224444544442444677777777*************557**********98 PP

                     EE CS
              B3  80 vv 81 
                     + 
  Csa15g006890.1 205 IG 206
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-15107212IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-17109222No hitNo description
PfamPF037541.1E-8111191IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.102.4E-17111214IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLLFPSHGEG LASTVPCGIR SEGLVMNTQD DTPLSSPTTT RLLDLFPCES VVVLDLFPCK  60
GGEFACRVPP SVTRNETGVS LAYFRNMPGV ERDIMDATEL TLSIEADIWK IKKTLTNSDV  120
GSQTRLLLPK EPANEHILKY LTEEEIKLVE DEGHQGLKIT VFDSTEKTTH QLRFKRWTSA  180
GSYVLNNNWN KDFVQRKDLK AGKTIGLFWN PYASRLHLRV LDML
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g006890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468027.11e-167PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLR0I8N38e-91R0I8N3_9BRAS; Uncharacterized protein
STRINGXP_010468027.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-26B3 family protein