PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g009090.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 466aa MW: 51276.4 Da PI: 7.1804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g009090.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	276	323	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa15g009090.2 276 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 323 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.57E-10	270	327	No hit	No description
SuperFamily	SSF47459	5.63E-17	270	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-17	272	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	276	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	278	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MENELFMNAG VSQPPVMMTS PSSSSAMLNW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS 60 IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGAPASN GNVSSASCYA 120 TPMSCSPPPP RHMMVTKPPT PLAEFSGDTG FAERAARFSC FGSRSFNGRT NPPFPINNNN 180 VPVVANEKMP RVSSTPALKP LAGESSGEIS RKRKTKSKQN SPSTASPSKE VEEKEDSNPK 240 RSKKTEANED KTKSVDDDPY KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP 300 GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMDAFMSK DIFPSSNNLM 360 HQQVLQLDSS AETLLSDHHH NTNLQLNPKI SSNNYIMTPL EPSETRSFVS HLPTLAHFTD 420 SISQYSTFSE DDLHSIIHMG FAQNRIHELN QGPSNQVPSN MKAEL*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MENELFMNAG VSQPPVMMTS PSSSSAMLNW VSSSTQPVDP SLSRNLSRDC LFWEKSTEQS  60
IFDSALSSLV SSPNSNFSGG GVAHGDNFII RELIGKLGNI GEIYGAPASN GNVSSASCYA  120
TPMSCSPPPP RHMMVTKPPT PLAEFSGDTG FAERAARFSC FGSRSFNGRT NPPFPINNNN  180
VPVVANEKMP RVSSTPALKP LAGESSGEIS RKRKTKSKQN SPSTASPSKE VEEKEDSNPK  240
RSKKTEANED KTKSVDDDPY KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  300
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMDAFMSK DIFPSSNNLM  360
HQQVLQLDSS AETLLSDHHH NTNLQLNPKI SSNNYIMTPL EPSETRSFVS HLPTLAHFTD  420
SISQYSTFSE DDLHSIIHMG FAQNRIHELN QGPSNQVPSN MKAEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	214	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g009090.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464354.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	R0G587	0.0	R0G587_9BRAS; Uncharacterized protein
STRING	XP_010464354.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]