PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g009460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 364aa    MW: 40134.9 Da    PI: 8.983
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g009460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.72.6e-3186176398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     ++rlws++De+v+L+G++d+++ktg ++ +d   f+e++k+ i+  vsk+ql++Kir+LK Kf++ + k     +psf++++d++if+ls+ iWg
  Csa15g009460.1  86 SKRLWSKDDELVILKGIVDYRNKTGLDYRSDSAVFFEYIKDGIDGIVSKDQLMNKIRKLKSKFRNSSVK-----KPSFTNPQDSEIFDLSMAIWG 175
                     79**************************************************************99888.....9*******************9 PP

          DUF573  98 s 98 
                     +
  Csa15g009460.1 176 K 176
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-2487175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVNKKQRSSG DGGFSDTYTC DLELRIKNSN GFLPPSPPDS PVLKSTENLD STPTAAAAAF  60
DDSLTLSKSR RKRKATLSPS YAPSDSKRLW SKDDELVILK GIVDYRNKTG LDYRSDSAVF  120
FEYIKDGIDG IVSKDQLMNK IRKLKSKFRN SSVKKPSFTN PQDSEIFDLS MAIWGKVKPG  180
CVDDSAKRTR SKVQAFVEHE VVTNGGEPEN DDGLAKGKSF DKNADKNTEN ENNGKRSEED  240
GAMTNGKPQY DNGAAKGGSC DDKLPSENVE KRVEKKKGEK GSEEEDGSAD DELCALKDAL  300
EATMFQHIGN YAQKQMLQKL KTIKAKERKE LSGEWKSLLA QEALLKSKKY SFTAKLANAA  360
FHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g009460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464407.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X1
TrEMBLD7L7079e-67D7L707_ARALL; Uncharacterized protein
STRINGXP_010464407.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.11e-35DNA-binding storekeeper protein-related transcriptional regulator