PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g010750.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 74aa MW: 8678.02 Da PI: 11.4374

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g010750.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	38	67	18	48
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++G+ W+ Ia+ ++ gR +kqc++rw+++l Csa15g010750.1 38 RYGPAKWSVIAQSLP-GRIGKQCRERWHNHL 67 588889*******.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.687	8	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-14	38	72	IPR009057	Homeodomain-like
CDD	cd00167	2.19E-7	38	67	No hit	No description
SuperFamily	SSF46689	2.77E-11	38	71	IPR009057	Homeodomain-like
Pfam	PF00249	7.9E-9	38	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MMISSISVID KRRAEFFQDR TEVQCLHRRM RKSLNSLRYG PAKWSVIAQS LPGRIGKQCR 60 ERWHNHLNPD INN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	5e-17	14	71	33	108	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-17	14	71	33	108	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250\|UniProtKB:Q94FL9, ECO:0000269\|PubMed:26069325}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g010750.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF214117	1e-48	AF214117.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R3) mRNA, complete cds.
GenBank	AY034964	1e-48	AY034964.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBank	AY142649	1e-48	AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBank	AY519651	1e-48	AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010486504.1	1e-24	PREDICTED: transcriptional activator Myb-like isoform X1
Refseq	XP_010486505.1	1e-24	PREDICTED: transcriptional activator Myb-like isoform X2
Refseq	XP_019092165.1	1e-26	PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like
Swissprot	Q8H1P9	2e-22	MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBL	A0A446NVV5	2e-22	A0A446NVV5_TRITD; Uncharacterized protein
TrEMBL	A0A453FWM6	1e-22	A0A453FWM6_AEGTS; Uncharacterized protein
STRING	XP_010486504.1	5e-24	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27405	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.2	6e-26	myb domain protein 3r-3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]