PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g012500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 608aa    MW: 67124.6 Da    PI: 7.3158
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g012500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.6e-21160245186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++++s +qCk+k++nl+kryk ++++++++  +sss++p+f+++e
  Csa15g012500.1 160 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEDVASSVskRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSGG--TSSSNWPWFKKME 245
                     5*************************************99999*****************************8..57789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-21158247No hitNo description
Gene3DG3DSA:3.40.1160.101.8E-61294363IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.84E-48301360IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.22E-107303603No hitNo description
PfamPF006961.9E-22304582IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.84E-48430602IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.101.8E-61433602IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HQHHHHHQVL HHTPYAPRRF TPKPSNQIHL SHHHQRNGDE  60
DDENDVVVEA SSAFHGVNPF VADENSNPYD DNNNAAVDED EDLDADRSRI GGARLEKRQS  120
QEELSDGGTT NGGETTPYGS FKRPRTSSSS ASEYRKDREE WSDAAIACLL DAYSDKFTQL  180
NRGNLRGRDW EDVASSVSKR CEKLSKSVEQ CKNKIDNLKK RYKLERHRMS GGTSSSNWPW  240
FKKMEDIVGN SLAMKGASDE DRSGSSMGNP VKPARRYPLV TYNPPVQISN VKPKATTSHP  300
RWRRVVLKIS GAALACTGPN NIDPKVINLI AREVAMACRL GVEVAIVVGS RNFFCGSTWI  360
TATGLDRTTA YHIRSVVFFI IQMVLHIIIA KTSLHLAAYL YCLTIFIDIL EIVVQINKSK  420
VLFSWRLAVQ VVLLTKSLLC NSMMASVMNS ALLQSSLEKI GVQARLQTAI SVQGVGEPYN  480
RQRATRHLDK GRVVIFGGIG ATLGNPLLSS DASAALRAID INAEAVVKGT NVDGVYDCHS  540
QDSNVTFEHI TFQDLASRGL TSMDTMALNF CEENSLPVVV FNFLEAGNIT KALCGEQVGT  600
LIDRNGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A2e-3544260278238uridylate kinase
1z9d_B2e-3544260278238uridylate kinase
1z9d_C2e-3544260278238uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g012500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464663.10.0PREDICTED: uncharacterized protein LOC104745181
TrEMBLA0A384L5830.0A0A384L583_ARATH; Uncharacterized protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGXP_010464663.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein