PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g014100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 470aa    MW: 54325 Da    PI: 8.4576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g014100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.7e-12118163247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ l++++ +++G+g+Wk I+r+  k + + q+ s+ qky
   Csa15g014100.1 118 NPWTAEEQRLFLEGLEKFGKGDWKNISRECVKSKNPMQVASHAQKY 163
                      69*******************************************9 PP
2Myb_DNA-binding44.73.1e-14357401347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++d+  ++G+g+Wk+I+r+  k+R++ q+ s+ qk+
   Csa15g014100.1 357 PWTAEEHRLFLDGLDKYGKGDWKSISRECVKTRSPMQVASHAQKF 401
                      7******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.882127IPR017930Myb domain
SMARTSM007170.72779IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-9111164IPR009057Homeodomain-like
PROSITE profilePS5129415.603112168IPR017930Myb domain
SuperFamilySSF466894.04E-14115168IPR009057Homeodomain-like
SMARTSM007172.2E-10116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.9E-13118167IPR006447Myb domain, plants
PfamPF002491.1E-8118163IPR001005SANT/Myb domain
CDDcd001672.45E-9119163No hitNo description
SMARTSM0071713264315IPR001005SANT/Myb domain
PROSITE profilePS5129415.566350406IPR017930Myb domain
SuperFamilySSF466891.05E-16351406IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-14353405IPR006447Myb domain, plants
SMARTSM007172.5E-9354404IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-10355397IPR009057Homeodomain-like
CDDcd001675.89E-10357401No hitNo description
PfamPF002493.0E-10357400IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MISRDFVKTR NLVQVASHAQ KYYKRQQLGR WSRDDDKRFE KALNVYRDES SPTFFEDIAL  60
FVKKPINEVY YYYKALVDDV ELIQSDNFDL PRYQEDDYKS LKEVTQSNNK VKEKAKGNPW  120
TAEEQRLFLE GLEKFGKGDW KNISRECVKS KNPMQVASHA QKYYIRQNSD RKKGKRSSIH  180
DMTLGDVRPP HVTVPGSNLK PMGGQPEFGG QIPPCQNYYP QNNVGPLIGS FNGRTCVALD  240
EVQVYRMIND DIKYRSIYVD TMVSIPLWTK EDNKHFEIAL AKFPEGSPSF LERIAEDLRK  300
PVEEVKFYYD ALVYDIEQIE AGKVPLPKYR DDDDDYVSLK KAAESKSQGT GRKKGIPWTA  360
EEHRLFLDGL DKYGKGDWKS ISRECVKTRS PMQVASHAQK FYLRQNSDSK KGKRSSIHDI  420
TLGHADNVTV HGSNLKSMGQ QPHFGDQIPP DQYYQYYSQD NIGLFDDDAH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g014100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468101.11e-151PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN65e-42SRM1_ARATH; Transcription factor SRM1
TrEMBLR0I6331e-99R0I633_9BRAS; Uncharacterized protein
STRINGXP_010468101.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-84MYB_related family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]