PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g014860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 242aa    MW: 27327.1 Da    PI: 8.7162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g014860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +lv ++k++G g+W + a++ g+ R++ +c++rw +yl
   Csa15g014860.1 14 RGEWAAEEDMKLVAYIKEHGLGNWGLLAKRAGLQRCGRSCRLRWMNYL 61
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.26965IPR017930Myb domain
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221568IPR009057Homeodomain-like
SuperFamilySSF466898.36E-211688IPR009057Homeodomain-like
CDDcd001673.04E-101661No hitNo description
PROSITE profilePS500904.50762101IPR017877Myb-like domain
SMARTSM007171766106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-869108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRMTWFDAD GMKRGEWAAE EDMKLVAYIK EHGLGNWGLL AKRAGLQRCG RSCRLRWMNY  60
LRPGIKRSKF TPQEENEIIK FHALLGNSKY RTEQTMTNHW NSCLKKRLAK ERIDPMMTHE  120
PTFLTVDEAT SYPTTLPSPT PNTSSSSSSS SSSTSSARLL NKLAAGIASR KYRLDRIKMV  180
IFSEQPREAS DKEKILITMD EKDLIACFMD IDEKLNTASF CDDTTTATST GFVAFDDLLN  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17141087108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g014860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101180.11e-135PREDICTED: transcription factor MYB80-like
SwissprotQ9LE633e-41MY106_ARATH; Transcription factor MYB106
TrEMBLR0I0D01e-119R0I0D0_9BRAS; Uncharacterized protein
STRINGXP_006298432.11e-120(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-94myb domain protein 95