PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g015190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 645aa    MW: 73535.6 Da    PI: 8.4072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g015190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-08588631445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+t  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
   Csa15g015190.1 588 WSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMIQCKKKFA 631
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.96E-2095177IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.3E-2095192IPR001623DnaJ domain
SMARTSM002711.5E-1698173IPR001623DnaJ domain
PROSITE profilePS5007617.99999181IPR001623DnaJ domain
PfamPF002265.5E-1799178IPR001623DnaJ domain
CDDcd062572.65E-1299170IPR001623DnaJ domain
PRINTSPR006253.7E-8104122IPR001623DnaJ domain
PRINTSPR006253.7E-8122137IPR001623DnaJ domain
PRINTSPR006253.7E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.272458513IPR017877Myb-like domain
SuperFamilySSF466892.02E-7459506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-5462505IPR009057Homeodomain-like
SMARTSM007175.1E-6462515IPR001005SANT/Myb domain
PfamPF002499.4E-6463505IPR001005SANT/Myb domain
CDDcd001679.98E-4465505No hitNo description
SMARTSM007172.1E-7584636IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-8585633IPR009057Homeodomain-like
PROSITE profilePS500906.841588634IPR017877Myb-like domain
PfamPF002496.1E-6588632IPR001005SANT/Myb domain
CDDcd001671.53E-5588634No hitNo description
Gene3DG3DSA:1.10.10.602.1E-4588632IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MPSRRSDSAI KLITYSEELV DGKPFYAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDNEDGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLATLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD STRRRIFDST  180
DEFDDEVPSD CLPQDFFKVF GPAFKRNARW SVNQRIPDLG DESTPLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK  300
RKEEEKAEKQ QKKDAKLLAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKNKEREK  360
KLLRKERNRL RALSAPLVAQ RLLDISEEDI ENLCMSLNTE QLQNLCDKMG NKTGLELAKV  420
IKDGCDTSRN DEAESKEKES KKSNGGTEPT TRVSQLDSST VKKQPWSKEE IDMLRKGMVK  480
YPKGTSRRWE VVSEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASIASPL  540
STREELGESL PTATTTTKAS PSKETVVASS QSSDNNDEAG GSSDTDGWST VQERALVQAL  600
KTFPKETSQR WERVAAAVPG KTMIQCKKKF AELKEIIRNK KTGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1419529820123Zuotin
5dje_B4e-1419529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQEEDAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g015190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464848.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
STRINGXP_010464848.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain