PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g016010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 310aa    MW: 32847.6 Da    PI: 10.3686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g016010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06103126225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k ++C  f+ t  C++G++C+F H
  Csa15g016010.1 103 KSKPCTKFFSTSGCPFGENCHFLH 126
                     7789******************** PP
2zf-CCCH35.41.8e-11275300127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt++C +f++ G C +GdrC+FaHg+
  Csa15g016010.1 275 FKTKICERFSK-GSCTFGDRCHFAHGE 300
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.21101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6102127IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-5103126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-8103126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.31E-15164244IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.9E-16174243IPR004088K Homology domain, type 1
SMARTSM003222.5E-11174244IPR004087K Homology domain
PROSITE profilePS5008414.571175239IPR004088K Homology domain, type 1
CDDcd001054.64E-13177239No hitNo description
PfamPF000138.8E-12177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-15269304IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7274300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8274304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624274301IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9275300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
KISSFPLFST TTTLGLGLLI FSFILSLILF FFPNPISICL LRFALLSRLK GYRFLLWIRI  60
CSLNMDVRKR GRPETGSFNS NGGGFKKSKQ EMEPYSSTGL GSKSKPCTKF FSTSGCPFGE  120
NCHFLHYVPG GYNAVSQLTN MGPPMSQAPR NMGGGGRFSG RGDSGPGHVS SFGASATAKI  180
SVDASLAGAI IGKGGVSSKQ ICRQTGAKLS IQDHERDPNL KNIELEGSFE QINEASAMVR  240
ELIGRLNSAA KKPPGGGGGG GGMGSEGKPH PGSNFKTKIC ERFSKGSCTF GDRCHFAHGE  300
AELRRSGIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g016010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857460.0AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464963.11e-177PREDICTED: zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-144C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A1J3CAM51e-148A0A1J3CAM5_NOCCA; Zinc finger CCCH domain-containing protein 36 (Fragment)
TrEMBLE4MYD41e-149E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-149V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_010464963.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-126C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]