PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g016630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 537aa    MW: 58935.1 Da    PI: 7.7633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g016630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-11182205326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C ++++t tCk+Gd+CkF H+
  Csa15g016630.1 182 EKDCTHYMQTRTCKFGDSCKFDHP 205
                     678********************8 PP
2zf-CCCH28.52.6e-09231257127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++ +t  Cky +rCkF+H++
  Csa15g016630.1 231 PGEPDCPYYIKTQRCKYASRCKFNHPR 257
                     5789*********************96 PP
3zf-CCCH375.8e-12276300327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f+++tG Ck+G +CkF+H++
  Csa15g016630.1 276 EPMCTFYMKTGKCKFGLTCKFHHPK 300
                     689********************96 PP
4zf-CCCH38.12.6e-12346372127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  Csa15g016630.1 346 PGEADCPFYLKTGSCKYGATCRYNHPE 372
                     57899********************96 PP
5zf-CCCH32.61.3e-10440459726
                     SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHg 26 
                     +++++tG+Ck+G+rC+F+H+
  Csa15g016630.1 440 QYYMKTGECKFGERCRFHHP 459
                     59*****************8 PP
6zf-CCCH41.42.4e-13491513527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  Csa15g016630.1 491 NCPYYMKTGTCKYGATCKFDHPP 513
                     6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432179207IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5181206IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4185204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357230258IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014230257IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5232257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5235260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4236259IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3273301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5278299IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9279300IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554345373IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5351372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.037433461IPR000571Zinc finger, CCCH-type
SMARTSM003560.002433460IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8440459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5441460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389486514IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6486513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5491513IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11491513IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5492511IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAHRQLYSYA LHQPSYTAAS ASAVSPAPPP QPPITALSSL YGSSSSAADH YYPDTTFRFL  60
VRDGSEALSN YNNSGTLASS SAMYHHHLPN TTASHLAYPQ LLQHQDASSW PPGVEVPGAA  120
SAVEPLPPGV KRTSEALYYP TLLGAHNTIG QTEAWYTTDY FTKRPKLEST SHLPVYPQRA  180
GEKDCTHYMQ TRTCKFGDSC KFDHPIWVPE GGIPDWKEAP VVPNEEYPER PGEPDCPYYI  240
KTQRCKYASR CKFNHPRAEA AVSVENQDVL PERPSEPMCT FYMKTGKCKF GLTCKFHHPK  300
DIQLPSSSQD NGSSEVLTSD PDATNNPHVT FTPALYHNSK GLPVRPGEAD CPFYLKTGSC  360
KYGATCRYNH PERTAFIPQV IPQAAGINYS LLSSNAANLN LGMVTPATSL YQTLSQPTIV  420
ELCFYMSVGL TKKSSSPILQ YYMKTGECKF GERCRFHHPA DRLSATTKQA SQQPNVKLSL  480
AGYPRREGAL NCPYYMKTGT CKYGATCKFD HPPPGEVMAK TTSEADAAGA TTDTTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g016630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465044.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J20.0D7L0J2_ARALL; Enhancer of ag-4 1
STRINGXP_010465043.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)