PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g017030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 443aa MW: 48835.5 Da PI: 6.9434

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g017030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.2e-31	235	289	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl Csa15g017030.1 235 KPRMRWTPELHESFVKSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 289 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-29	233	290	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-16	234	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-23	235	290	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	237	288	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-22	325	372	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MNRHSLVSTT PNDKGVGQAC LSSLPPVHNF LNVQPETRKS PFIRSQSPDS PGQLWSKNTS 60 QSTFSRSSTF CTNLYLSSSS TSETQKHLGN SLPFLPDPSS YSHSASGVES ARSPSVFSED 120 LGNQYGGGDN SGSLVKDFLN LSGDACSDGG FHDFGCSNDS YCLSDQMELQ FLSDELELAI 180 TDRAETPRLD EIYETPLASS NPVTRLSPSQ SCVAGALSVD VVSSHPSPGS AANHKPRMRW 240 TPELHESFVK SVIKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK 300 KNETSEERKL ALSNSEADEK KKGAIQLTEA LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAK 360 YLEKMLEEQR KTGRLICSSP SQTVLSPSDD SIQDSQNMSK TGATSPQPSP SKKKKASDTE 420 VNKCESPQKR PRLENKADLE RS*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MNRHSLVSTT PNDKGVGQAC LSSLPPVHNF LNVQPETRKS PFIRSQSPDS PGQLWSKNTS  60
QSTFSRSSTF CTNLYLSSSS TSETQKHLGN SLPFLPDPSS YSHSASGVES ARSPSVFSED  120
LGNQYGGGDN SGSLVKDFLN LSGDACSDGG FHDFGCSNDS YCLSDQMELQ FLSDELELAI  180
TDRAETPRLD EIYETPLASS NPVTRLSPSQ SCVAGALSVD VVSSHPSPGS AANHKPRMRW  240
TPELHESFVK SVIKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK  300
KNETSEERKL ALSNSEADEK KKGAIQLTEA LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAK  360
YLEKMLEEQR KTGRLICSSP SQTVLSPSDD SIQDSQNMSK TGATSPQPSP SKKKKASDTE  420
VNKCESPQKR PRLENKADLE RS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	235	292	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g017030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050889	0.0	AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	AY096674	0.0	AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465093.1	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_010465094.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	R0HYE1	0.0	R0HYE1_9BRAS; Uncharacterized protein
STRING	XP_010465093.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]