PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g018070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 510aa    MW: 57089 Da    PI: 4.8832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g018070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.32e-811455092374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilk 92 
                     ++lL  cA a++s++ +++q++L+ lselas++gd+++R+a + ++AL+++l++ s ++ ++ + + +++     e+ +++k+   f+evsP++ 
  Csa15g018070.1 145 EQLLNPCALAITSRNSSRVQQYLCVLSELASSSGDANRRIADFGLRALQHHLSSsSLPSSSSPVVTFASA-----EVKMFQKTllkFYEVSPWFA 234
                     689**************************************************93444444444444433.....33333333446********* PP

            GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                     + + +aN+aIl+ ++++    + +H++D+++s+G+QWp+Ll+aL++R+ ++pp++RiT+v++ +++          ++ ++L  fA++l++++++
  Csa15g018070.1 235 LPNNMANSAILQILAQDpiakKDLHVLDIGVSHGMQWPTLLEALSCRSeGPPPHIRITVVSDLTADipfsVGPPAYSYDSQLLGFARSLKINLQI 329
                     ****************99988999************************55667*********99999998889999******************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                     +v+        +++ ++++++E+l+V+ +++lh+l     s+++er+e +++++sl+Pk v+++e++ +  +s++F+e+f+++ley+++++ds++
  Csa15g018070.1 330 SVV-------DKFQLIETSSHETLIVCAQFRLHHLN---YSIPEERSEAVRALRSLRPKGVILCENNGEGsTSGDFAEGFSRKLEYMWKFLDSTN 414
                     *96.......456778999****************8...88999999********************9998999********************9 PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                     +++    +e+++ Er+l++ e+++v+++ g+      e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ +  + l+Wk+++
  Csa15g018070.1 415 SGF----KEENSEERKLVEGEATKVLMNTGEI----DEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEA 501
                     997....77888889999999*********98....999**********************************666666666666666******* PP

            GRAS 367 LvsvSaWr 374
                     + ++S W+
  Csa15g018070.1 502 VSFCSLWK 509
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.196118488IPR005202Transcription factor GRAS
PfamPF035147.0E-79145509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSFLLHE FDGSQTWEWD QTQEPEHGFL  60
QSYSQDLSAY VGCEATNLEV VTEAPLIYLD PPPEFQQPND QSRKRSSDKV IEAQHVKRSA  120
RSKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALAITSRNS SRVQQYLCVL SELASSSGDA  180
NRRIADFGLR ALQHHLSSSS LPSSSSPVVT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA  240
NSAILQILAQ DPIAKKDLHV LDIGVSHGMQ WPTLLEALSC RSEGPPPHIR ITVVSDLTAD  300
IPFSVGPPAY SYDSQLLGFA RSLKINLQIS VVDKFQLIET SSHETLIVCA QFRLHHLNYS  360
IPEERSEAVR ALRSLRPKGV ILCENNGEGS TSGDFAEGFS RKLEYMWKFL DSTNSGFKEE  420
NSEERKLVEG EATKVLMNTG EIDEGKDKWY ERMREAGFAA EAFGEDAIDG AKSLLRKYDK  480
NWEIRMEDGD TFAGLTWKGE AVSFCSLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3513650979473Protein SHORT-ROOT
5b3h_B1e-3513650925419Protein SHORT-ROOT
5b3h_E1e-3513650925419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g018070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465256.10.0PREDICTED: scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGXP_010465256.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein