PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g018480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 451aa    MW: 48801.5 Da    PI: 10.2232
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g018480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-1484171186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +   +  + +s++++fd+l+
  Csa15g018480.1  84 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKTPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 171
                     7*************************************85444455566778*****************999987..66678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-2582173No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEDDEDIRSH GSDSPDPSSS PPAGRITVTV ASTGPPSYSL TPPANSSQKD HPDALALALL  60
PIQASGGGGS SSGRPTGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKEVAEI  120
VSSREDYGKT PKTDIQCKNR IDTVKKKYKQ EKVRIATGGG RSRWVFFDKL DRLIGSTAKI  180
PAATPGVSGG GGPGLHKIPM GIPMGTRSNM YHQQAKAAAT PPFNNLDRLM GATARVSAAS  240
FGGSGGGGGG GGSVNVPMGI PMSSRSTPFG QQGRTLPQQR RTLPQQQQQG MMVKRCSESK  300
RWRFKKRNGS ESDSESEAAM SDDSGDSLPP PPLSKRMKTE EKRKQDGDGV GNKWTELTRA  360
IMRFGEAYEQ TENAKLQQVV EMEKERMKFL KELELQRMQF FVQTQLEISQ LKQQHGGRMG  420
NTSNNNDHNS RKNNMNAIVN NSNNNVGNNN *
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g018480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006000.0AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBankAY0721870.0AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankAY1138530.0AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465305.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z70.0A0A178V8Z7_ARATH; ASIL2
STRINGXP_010465305.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors