PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g022980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 723aa    MW: 81607.1 Da    PI: 6.6929
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g022980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1159.46.9e-50311464118
            CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     e k+rwl+++ei+aiL n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+++tf rr
  Csa15g022980.1  31 EaKSRWLRPNEIHAILSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDKTTFVRR 125
                     4499******************************************************************************************* PP

            CG-1  98 cywlLeeelekivlvhylevk 118
                     cywlL++++e+ivlvhy++++
  Csa15g022980.1 126 CYWLLDRARENIVLVHYRDTQ 146
                     ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.23825151IPR005559CG-1 DNA-binding domain
SMARTSM010767.9E-7728146IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4431144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.7E-5319403IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.8E-16319405IPR014756Immunoglobulin E-set
PfamPF018331.1E-7320404IPR002909IPT domain
CDDcd002041.40E-14513615No hitNo description
PfamPF127965.7E-7518585IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-16519618IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.2E-16520622IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91523588IPR020683Ankyrin repeat-containing domain
SMARTSM002484.5E-6556585IPR002110Ankyrin repeat
PROSITE profilePS5008811.808556588IPR002110Ankyrin repeat
PROSITE profilePS500968.023705723IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDGDGSRRLI GSEIHGFHTL QDLDVQTTWE EAKSRWLRPN EIHAILSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDKT  120
TFVRRCYWLL DRARENIVLV HYRDTQEAAT SSGESNSSPI SVSDQTFPNL VAPENIDFSI  180
ENSRYLASNN SPVVRNHDIS LHDINTLDWD ELLIPTDLNN LSAPTVDDLS YFTEPLQNAA  240
NGSAEPVYMT MADESLDALL NNGPQSRESF GRWMNSFIGE SNDLLEGPSF SPMVTHDQDP  300
LAPQALFQPH SNIPEQVFNI TDVSPSWAYS SEKTKILVTG FLHNSYQHLE RSNLFCICGD  360
SCVPAEYIQA GVYRCIIPPH SPGLVNLYLS VDGNKPISQC FRFEHRSVPV LDKTIPEENQ  420
ESKWEEFEFQ VRLSHLLFTS SNKLNVLSSK ISPTNLRDAK KLASKTSHLL NSWAYLLKSI  480
QGNKVSFDQA KDHLFELTLK NRLKEWLMEK VLEGRSTLDY DSKGLGVIHL CAILGYTWSI  540
QLFSLSGLSL NFRDKQGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KHNLDGCMAS  600
DLAQQNGYDG LAAYLAEKCL VAQFRDMKIA GNISGNLEAC KAEMMNQGTL PEDEQSLKDA  660
LAAYRTAAEA AARIQGAFRE KALKAARSSV IQFANKEEEA KSIIAAMKIQ NAFRKYDTRR  720
KIE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g022980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465721.10.0PREDICTED: calmodulin-binding transcription activator 6-like isoform X1
RefseqXP_010465722.10.0PREDICTED: calmodulin-binding transcription activator 6-like isoform X1
RefseqXP_010465723.10.0PREDICTED: calmodulin-binding transcription activator 6-like isoform X2
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLR0G3E30.0R0G3E3_9BRAS; Uncharacterized protein
STRINGXP_010465723.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]