PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g024970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 217aa MW: 25537.4 Da PI: 10.3103

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g024970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	7.7e-54	43	165	1	125
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkdke+++ Csa15g024970.1 43 LPPGFRFHPTDEELITHYLVRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR- 135 79***********************999.88***********999999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmhe 125 +g lvg+kktLvfykgrapkgek++Wvmhe Csa15g024970.1 136 SGVLVGMKKTLVFYKGRAPKGEKSNWVMHE 165 999************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-57	38	165	IPR003441	NAC domain
PROSITE profile	PS51005	51.213	43	184	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	44	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
VTLIIEKLLA VNLLRLLQER EENHSSYFCC LKLEDNKKME DNLPPGFRFH PTDEELITHY 60 LVRKVSDTGF TGKAVVDVDL NKCEPWDLPA KASMGEKEWY FFSQRDRKYP TGLRTNRATE 120 AGYWKTTGKD KEIYRSGVLV GMKKTLVFYK GRAPKGEKSN WVMHERNGLY VGYSKRARQR 180 RKHKNNNLNL HNHLLDLHAM RIHQWQMNLK ISRFRI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-51	42	165	19	142	NAC domain-containing protein 19
3swm_B	4e-51	42	165	19	142	NAC domain-containing protein 19
3swm_C	4e-51	42	165	19	142	NAC domain-containing protein 19
3swm_D	4e-51	42	165	19	142	NAC domain-containing protein 19
3swp_A	4e-51	42	165	19	142	NAC domain-containing protein 19
3swp_B	4e-51	42	165	19	142	NAC domain-containing protein 19
3swp_C	4e-51	42	165	19	142	NAC domain-containing protein 19
3swp_D	4e-51	42	165	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g024970.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026658	1e-101	AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBank	CP002686	1e-101	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019092242.1	1e-121	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q9FLJ2	1e-70	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A178VF42	1e-88	A0A178VF42_ARATH; NAC058
STRING	XP_010465939.1	2e-91	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-92	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]