PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g026630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 162aa    MW: 18665.9 Da    PI: 11.2324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g026630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-1430114190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     ffk  +p +++k++++++p +f++  g++   +  +tl+++ g + ++kl  ++ ++++++ +GW+eF++a+ +keg f++F++ + s+f
  Csa15g026630.1  30 FFKLVLP-STMKKDMMRIPPTFVKLQGSN--LPDVVTLKTPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLLFQYYEISSF 114
                     6666655.5556667********766766..8889***************..*******************************8654655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1724114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1924110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-1328108No hitNo description
PROSITE profilePS5086310.84229128IPR003340B3 DNA binding domain
PfamPF023629.2E-1330113IPR003340B3 DNA binding domain
SMARTSM010191.2E-1330128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVTTRRTKAR VTSSSHRRPP QDPESPVKTF FKLVLPSTMK KDMMRIPPTF VKLQGSNLPD  60
VVTLKTPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLLFQYYE ISSFRTKGLL  120
ELKLQGGIIN LLMVVIQNTT PRRDQVTLSL TRFYTVRRLC S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g026630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296811e-105AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBankBT0061391e-105BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBankBT0085411e-105BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466029.18e-80PREDICTED: B3 domain-containing protein At3g18960-like
SwissprotQ84R272e-64Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLR0GA332e-63R0GA33_9BRAS; Uncharacterized protein
STRINGXP_010466029.13e-79(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.19e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]