PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g027280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 282aa MW: 30037.4 Da PI: 5.773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g027280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	161	200	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Csa15g027280.1 161 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 200 57788899*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.16	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-6	160	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-4	160	204	No hit	No description
SuperFamily	SSF47459	6.67E-11	160	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGDNTAEDHD DLAMVEAEGV TSFSELLMFS DGVLSSSDHQ HESSSGGDGG GEDSLGFVFS 60 GKTGSRMLCF SGDYQNDDAS LFLEPSSLPS SGVSVLDPSC IKIDDCKNFK DACTVDKSTK 120 PSNKKRTGTG NEHEPDQNRK PGKKCKRNQD KSSVGVGTVK VRKERLGERI AALQQLVSPY 180 GKTDAASVLH EAMGYIKFLQ DQIQVLCSPY LINHTLVDGG VVTGDVMAAM KAKDLRSRGL 240 CLVPVSSTVH VENSNGADFW SPATMGHTTT TSPSTLHHQG F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g027280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084520	0.0	AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466099.1	0.0	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q9LT67	1e-160	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D7L9Z7	1e-158	D7L9Z7_ARALL; Uncharacterized protein
STRING	XP_010466099.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-124	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]