PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g027830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26254.3 Da    PI: 5.907
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g027830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.13.5e-112160443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skRr++++ KA  L+ L +a++av ++s+ 
  Csa15g027830.1 21 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVASPA 60
                    56889********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-161069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.7131058IPR002100Transcription factor, MADS-box
CDDcd002669.21E-221181No hitNo description
SuperFamilySSF554553.4E-141282IPR002100Transcription factor, MADS-box
PfamPF003191.5E-102369IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MPAMTMKRRG TKRKIEIKKR DTKQQRSVAC SKRRQTLFSK AADLCLLSGA NIAVFVASPA  60
ENNDVVYSFS GYSPASEIAE SRVLVGRPDL YRNCDDISEL NVIEDRIMRT RKHLMDCLEK  120
KEKSQSVSNS DQNPSFSSLD ENPKSSSPSS CDKIASFEQN STFSSLEKIC GEPSSQATCY  180
YNQNHNFAIE DLYRDSSYGQ SGYLLKEDEY GFVESLWETG KQSDIMFQET FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713RRGTKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g027830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487931.21e-141PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096884.11e-141PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096885.11e-141PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096886.11e-141PREDICTED: uncharacterized protein LOC104765850 isoform X1
TrEMBLR0H9P96e-84R0H9P9_9BRAS; Uncharacterized protein
STRINGXP_010487927.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.15e-79M-type_MADS family protein