PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g029250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 437aa    MW: 47527.9 Da    PI: 8.5828
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g029250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07110129626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+f+ + G C++G++C+F H+
  Csa15g029250.1 110 CKFWIA-GNCRRGEQCQFLHS 129
                     888888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.906104131IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7104130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6106129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6106129IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4108129IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.37E-43134433IPR017986WD40-repeat-containing domain
SMARTSM003204.0E-4135174IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.5E-13137250IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029424.284142436IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.915142183IPR001680WD40 repeat
PfamPF117152.8E-5157191No hitNo description
PRINTSPR003202.1E-7161175IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM00320260217254IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.0E-29251434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.8E-4264302IPR001680WD40 repeat
PfamPF004005.3E-5266302IPR001680WD40 repeat
PROSITE profilePS5008210.408287311IPR001680WD40 repeat
PRINTSPR003202.1E-7289303IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780289303IPR019775WD40 repeat, conserved site
SMARTSM003209.4E-5305342IPR001680WD40 repeat
PfamPF004000.0016307341IPR001680WD40 repeat
PROSITE profilePS500828.67312351IPR001680WD40 repeat
PRINTSPR003202.1E-7329343IPR020472G-protein beta WD-40 repeat
SMARTSM00320110348389IPR001680WD40 repeat
SMARTSM003201.9392429IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDYEAPRRYS QSRNLGGVKR KPQDFAADVV PRRRYAPSDN TMKKQGPTKF SRNLVWTSKE  60
YKVPEGNRPR KDQANGSTKP PVLGRGCSVS VSSKQPRKIA ISDTEKSVCC KFWIAGNCRR  120
GEQCQFLHSW SCFPGLAMVA SLEGHKKDIK GIALPQGSDK LFSVSSDDTL RIWDCHTGHC  180
VHTINLQAEA AAGSLISEGS WVFLGLQNAV KAFNVQTSKD LHLDGVVAGQ VHAITVANGM  240
LFAGTSSGSI SVWKATTDSD VSDPFKYLTS LEGHHTGEVT CFVVGCQLLY SGSVDKTIKV  300
WDLNTLQCVT TLKQHTDTVT SLLCWNKCLI SSSLDGTIKV WAFSENGSLE VTHTRRQEQS  360
VHALCGVHDA EAKPIIFCSY QNGTVGIYDL PSFEERGNMF STHTISTLTV GPGGLLFSGD  420
KSGNLRVWSL AAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1p22_A1e-16142341169361F-box/WD-repeat protein 1A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g029250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466184.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010466184.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein